Using the CDK as a backend to R
نویسنده
چکیده
The CDK framework provides a wide variety of cheminformatics functionality. Consequently a large variety of applications can be developed using this framework. One important application is the data mining of chemical information which requires a combination of cheminformatics and statistical tools. This article focusses on interfacing the CDK framework with the R [1] statistical environment for the purposes of data mining and QSAR modeling.
منابع مشابه
Using R to provide statistical functionality for QSAR modeling in CDK A description of the integration of CDK and the R statistical environment
A previous article[1] discussed the use of the CDK framework as a cheminformatics backend to statistical software, allowing for easy access to chemical information for modeling purposes. However, access to statistical functionality from within the CDK framework is a very useful feature. Ideally, the CDK should be agnostic in terms of which backend provides the statistical functionality. This re...
متن کاملCDK Blockade Using AT7519 Suppresses Acute Myeloid Leukemia Cell Survival through the Inhibition of Autophagy and Intensifies the Anti-leukemic Effect of Arsenic Trioxide
The strong storyline behind the critical role of cyclin-dependent kinase (CDK) inhibitor proteinsin natural defense against malignant transformation not only represents a heroic perspective forthese proteins, but also provides a bright future for the application of small molecule inhibitorsof CDKs in the novel cancer treatment strategies. The results of the present study revea...
متن کاملCDK Blockade Using AT7519 Suppresses Acute Myeloid Leukemia Cell Survival through the Inhibition of Autophagy and Intensifies the Anti-leukemic Effect of Arsenic Trioxide
The strong storyline behind the critical role of cyclin-dependent kinase (CDK) inhibitor proteinsin natural defense against malignant transformation not only represents a heroic perspective forthese proteins, but also provides a bright future for the application of small molecule inhibitorsof CDKs in the novel cancer treatment strategies. The results of the present study revea...
متن کاملTheoretical Study of Flavopiridol Binded to Transition Metals
More recently medical chemistry research has been focused on proteins that drive and controlcell cycle progression. Among them, the cyclin dependent kinases (cdk’s) are a group ofserine/threonine kinases, which rule the transition between successive stages of the cell cycle. Theactivity of cdk’s is regulated by multiple mechanisms, including binding to cyclins, which is a broadclass of positive...
متن کاملInhibition of Cyclin-dependent Kinase (CDK) Decreased Survival of NB4 Leukemic Cells: Proposing a p53-Independent Sensitivity of Leukemic Cells to Multi-CDKs Inhibitor AT7519
An unbounded number of events exist beneath the intricacy of each particular hematologic malignancy, prompting the tumor cells into an unrestrained proliferation and invasion. Aberrant expression of cyclin-dependent kinases (CDKs) is one of these events which disrupts regulation of cell cycle and subsequently, results in cancer progression. In this study, we surveyed the repressive impact of mu...
متن کامل